Servants of the Imperium

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Servants of the Imperium was a webcomic set in the Warhammer 40,000 universe, written by Rob Leigh. Originally started in 2008 as a few one-off strips based on a Dark Heresy campaign he had been involved in, it quickly launched into a deeper plot about the race for a Chaos artifact.

If that sounds like Order of the Stick, you're not far off; the two comics share a similar art style, comedic style, and plot development. Of course, SotI is far younger than OotS, and therefore far less developed and far less popular, but still fairly good.

It can be found here.